Publication: Sluka J, Shirinifard A, Swat MH, Cosmanescu A, Heiland RW, Glazer JA.
The cell behavior ontology: describing the intrinsic biological behaviors of real and model cells seen as active agents. Bioinformatics [Internet]. 2014 Apr 22; 1-8.
Publication: Somogyi E, Sluka J, Glazer JA.
Formalizing knowledge in multi-scale agent-based simulations. Proc ACM/IEEE 19th Int Conf Model Driven Eng Lang Syst - Model '16. 2016;115-22.
Publication: Belmonte JM, Clendenon S, Oliveira GM, Swat MH, Greene E V., Jeyaraman S, et al.
Virtual-Tissue Computer Simulations Define the Roles of Cell Adhesion and Proliferation in the Onset of Kidney Cystic Disease. Mol Biol Cell [Internet]. 2016 May 18;(317):mbc.E16-01-0059.
Publication: Sluka J, Fu X, Swat M, Belmonte JM, Cosmanescu A, Clendenon S, et al.
A Liver-centric Multiscale Modeling Framework for Xenobiotics. PLOS Comp Bio [Internet]. 2016;First subm(1):1-40.
Publication: Fu X, Gens JS, Glazer JA, Burns SA, Gast TJ.
Progression of Diabetic Capillary Occlusion: A Model. PLoS Comput Biol. 2016;12(6):1-46.
Publication: Xiao F, Sluka J, Clendenon S, Glazer JA, Wang Z, Klaunig JE, et al.
An in-Silico Model of Xenobiotic Distribution and Metabolism in a Simulated Mouse Hepatic Lobule [Internet]. 2016.
Publication: de Almeida R, Clendenon S, Richards B, Boedigheimer M, Damore M, Rossetti S, et al.
Transcriptome analysis reveals manifold mechanisms in cyst development in ADPKD. Hum Genomics. Human Genomics; 2016;1:1-24.
Pan-American Advanced Studies Institutes Presents:
From Cells to Ecosystems: Frontiers in Collaborative Quantitative Physics-Based Multiscale Modeling of Biological Processes July 8th-26th, 2013, Porto Alegre, Brazil
Presentations from the conference
Toward the 3D Virtual Cell - UC San Diego - Atkinson Hall, December 13-14, 2012
New Publication:
Visualizing Cells and their Connectivity Graphs for CompuCell3D (in 2nd IEEE Symposium on Biological Data Visualization, Seattle October 2012)
Modelling: Computing cancer – Software models of complex tissues and disease are yielding a better understanding of cancer and suggesting potential treatments. (in Nature Outlook - Physical Scientists Take On Cancer)
Modeling of Multicellular Development and Cancer: European CompuCell3D/SBW Hands-on Workshop Oct 8th-Oct 13th 2012, Lorentz Center & QuanTissue ESF program
Publication:
Adhesion Failures Determine the Pattern of Choroidal Neovascularization in the Eye: A Computer Simulation Study (
IU press release,
GSU press release)
Developing Multi-Scale, Multi-Cell Biological Simulations with CompuCell3D and SBW July 30th-August 3rd 2012, Indiana University & The Hamner Institutes for Health Sciences, Research Triangle Park, NC, USA
Publication:
A Multi-cell, Multi-scale Model of Vertebrate Segmentation and Somite Formation
Developing Multi-Scale, Multi-Cell Developmental and Biomedical Simulations with CompuCell3D and SBW Joint Training Workshop at the Biocomplexity Institute, August 8th-19th 2011, Indiana University Bloomington
NIMBioS Tutorial: Multi-cell, Multi-scale Modeling
CBO4: Cell Behavior Ontology Workshop 2011
Public Lecture: Cooperation, conflict, and sex in the evolution of individuality. (
Press release)
Live Web Broadcast of Biocomplexity XI Workshop
Scientist at Work - James Glazier
Fall 2010 Seminars Updated
Biocomplexity XI Workshop: The Evolution of Cooperation.
More details
Cell Behaviour Ontology Workshop.
More details
VPH 2010: Registration and Call for abstracts
NIMBioS sponsored workshop: Modeling Toxoplasma gondii
New Jobs Added
List of Biocomplexity related courses added for Spring 2010
List of softwares updated
Check our new list of Affiliated faculty members
Fall 2009 Seminar List updated
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